Search results for "network visualization"
showing 2 items of 2 documents
EFMviz
2020
Elementary Flux Modes (EFMs) are a tool for constraint-based modeling and metabolic network analysis. However, systematic and automated visualization of EFMs, capable of integrating various data types is still a challenge. In this study, we developed an extension for the widely adopted COBRA Toolbox, EFMviz, for analysis and graphical visualization of EFMs as networks of reactions, metabolites and genes. The analysis workflow offers a platform for EFM visualization to improve EFM interpretability by connecting COBRA toolbox with the network analysis and visualization software Cytoscape. The biological applicability of EFMviz is demonstrated in two use cases on medium (Escherichia coli, iAF1…
Visualizing linguistic variation in a network of Latin documents and scribes
2018
This article explores whether and how network visualization can benefit philological and historical-linguistic study. This is illustrated with a corpus-based investigation of scribes' language use in a lemmatized and morphologically annotated corpus of documentary Latin (Late Latin Charter Treebank, LLCT2). We extract four continuous linguistic variables from LLCT2 and utilize a gradient colour palette in Gephi to visualize the variable values as node attributes in a trimodal network which consists of the documents, writers, and writing locations underlying the same corpus. We call this network the "LLCT2 network". The geographical coordinates of the location nodes form an approximate map, …